Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4336 domain-containing protein | BST98_RS16670 | Not Available | Negative | 479975 - 480685 | 27300.2 |
| hth-type transcriptional regulator malt | BST98_RS16675 | Not Available | Negative | 480704 - 483412 | 103696.0 |
| glycogen/starch/alpha-glucan phosphorylase | BST98_RS16680 | Not Available | Positive | 483835 - 486297 | 92805.5 |
| 4-alpha-glucanotransferase | BST98_RS16685 | Not Available | Positive | 486416 - 488596 | 81847.0 |
| 1,4-alpha-glucan branching protein glgb | BST98_RS16690 | Not Available | Positive | 488651 - 490798 | 82085.0 |
| abc-atpase domain-containing protein | BST98_RS16695 | Not Available | Negative | 490911 - 492557 | 61920.3 |
| atp-binding protein | BST98_RS16700 | Not Available | Negative | 492736 - 494064 | 49906.9 |
| response regulator transcription factor | BST98_RS16705 | Not Available | Negative | 494054 - 494713 | 24516.6 |
| pepsy domain-containing protein | BST98_RS16710 | Not Available | Negative | 494710 - 495063 | 13472.3 |
| peptidylprolyl isomerase | BST98_RS16715 | Not Available | Positive | 495291 - 495617 | 11849.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

