Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobyric acid synthase | BST98_RS16370 | Not Available | Positive | 419032 - 420510 | 53444.3 |
| ydcf family protein | BST98_RS16375 | Not Available | Negative | 420625 - 421716 | 40464.4 |
| amino acid abc transporter permease | BST98_RS16380 | Not Available | Negative | 421951 - 422841 | 33298.0 |
| transporter substrate-binding domain-containing protein | BST98_RS16385 | Not Available | Negative | 422913 - 423728 | 30502.5 |
| amino acid abc transporter permease | BST98_RS16390 | Not Available | Negative | 423854 - 424699 | 31276.7 |
| amino acid abc transporter atp-binding protein | BST98_RS16395 | Not Available | Negative | 424707 - 425447 | 27588.4 |
| 3-deoxy-7-phosphoheptulonate synthase arog | BST98_RS16400 | Not Available | Positive | 425881 - 426936 | 38692.3 |
| hypothetical protein | BST98_RS22370 | Not Available | Negative | 427025 - 427198 | 6586.98 |
| hypothetical protein | BST98_RS16405 | Not Available | Positive | 427444 - 427935 | 17918.9 |
| rhomboid family intramembrane serine protease | BST98_RS16410 | Not Available | Positive | 427919 - 428491 | 21311.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

