Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m14-type cytosolic carboxypeptidase | BST98_RS16315 | Not Available | Negative | 410835 - 411962 | 42803.1 |
| nudix hydrolase | BST98_RS16320 | Not Available | Negative | 412005 - 412409 | 15161.0 |
| gnat family n-acetyltransferase | BST98_RS16325 | Not Available | Positive | 412542 - 413060 | 19565.7 |
| hypothetical protein | BST98_RS16330 | Not Available | Negative | 413050 - 413310 | 9563.82 |
| yccf domain-containing protein | BST98_RS16335 | Not Available | Positive | 413515 - 413970 | 16315.2 |
| comea family dna-binding protein | BST98_RS22575 | Not Available | Positive | 414411 - 414896 | 17150.1 |
| nucleotidyltransferase family protein | BST98_RS16350 | Not Available | Negative | 415001 - 416101 | 42535.0 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | BST98_RS16355 | Not Available | Positive | 416311 - 416838 | 19107.2 |
| histidine phosphatase family protein | BST98_RS16360 | Not Available | Positive | 416901 - 417533 | 24560.2 |
| dead/deah box helicase | BST98_RS16365 | Not Available | Negative | 417663 - 418892 | 45210.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

