Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | BST98_RS16005 | Not Available | Negative | 342506 - 343273 | 28693.8 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | BST98_RS16010 | Not Available | Negative | 343283 - 344116 | 29276.1 |
| tetr/acrr family transcriptional regulator | BST98_RS16015 | Not Available | Negative | 344411 - 344998 | 21803.1 |
| carboxymuconolactone decarboxylase family protein | BST98_RS16020 | Not Available | Positive | 345232 - 345780 | 20582.9 |
| hypothetical protein | BST98_RS16025 | Not Available | Positive | 345987 - 347063 | 40966.0 |
| hypothetical protein | BST98_RS16030 | Not Available | Positive | 347050 - 348501 | 54819.7 |
| hypothetical protein | BST98_RS16035 | Not Available | Negative | 348531 - 348968 | 16579.9 |
| hypothetical protein | BST98_RS16040 | Not Available | Negative | 348943 - 349866 | 33726.0 |
| alkaline phosphatase | BST98_RS16045 | Not Available | Positive | 350135 - 351712 | 57323.0 |
| atp-dependent rna helicase dbpa | BST98_RS16050 | Not Available | Positive | 351803 - 353194 | 50690.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

