Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lpo_1073/vpar_1526 family protein | BST98_RS15850 | Not Available | Positive | 306051 - 306893 | 31204.4 |
| hypothetical protein | BST98_RS15855 | Not Available | Positive | 307748 - 308770 | 37873.1 |
| aminomethyl-transferring glycine dehydrogenase | BST98_RS15860 | Not Available | Negative | 309035 - 311908 | 105674.0 |
| glycine cleavage system protein gcvh | BST98_RS15865 | Not Available | Negative | 312029 - 312412 | 13596.7 |
| glycine cleavage system aminomethyltransferase gcvt | BST98_RS15870 | Not Available | Positive | 312694 - 313812 | 40931.7 |
| gntr family transcriptional regulator | BST98_RS15875 | Not Available | Positive | 314187 - 314885 | 26854.3 |
| substrate-binding domain-containing protein | BST98_RS15880 | Not Available | Negative | 315221 - 316225 | 37367.1 |
| ribokinase | BST98_RS15885 | Not Available | Negative | 316412 - 317332 | 32074.4 |
| ribose abc transporter substrate-binding protein rbsb | BST98_RS15890 | Not Available | Negative | 317500 - 318378 | 30691.0 |
| ribose abc transporter permease | BST98_RS15895 | Not Available | Negative | 318452 - 319438 | 34504.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

