Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| semisweet transporter | BST98_RS15605 | Not Available | Negative | 248018 - 248311 | 10775.6 |
| branched-chain amino acid transport system ii carrier protein | BST98_RS15610 | Not Available | Negative | 248404 - 249747 | 47303.2 |
| hypothetical protein | BST98_RS22335 | Not Available | Negative | 249914 - 250051 | 5046.49 |
| formate c-acetyltransferase | BST98_RS15615 | Not Available | Negative | 250247 - 252544 | 85948.1 |
| branched-chain amino acid transport system ii carrier protein | BST98_RS15620 | Not Available | Negative | 252829 - 254142 | 46372.3 |
| pyrimidine 5'-nucleotidase | BST98_RS15625 | Not Available | Negative | 254453 - 255127 | 25591.9 |
| glycosyl hydrolase family 18 protein | BST98_RS15630 | Not Available | Positive | 255636 - 257981 | 84614.7 |
| Trna-gly | Not Available | Not Available | Positive | 258229 - 258303 | Not Available |
| type ii secretion system protein | BST98_RS22660 | Not Available | Positive | 258503 - 259081 | 20652.8 |
| hypothetical protein | BST98_RS15645 | Not Available | Positive | 259148 - 259486 | 12993.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

