Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| geved domain-containing protein | BST98_RS15410 | Not Available | Positive | 188577 - 197003 | 298281.0 |
| hypothetical protein | BST98_RS15415 | Not Available | Positive | 197210 - 197812 | 22608.8 |
| beta strand repeat-containing protein | BST98_RS15420 | Not Available | Positive | 197905 - 201168 | 110859.0 |
| duf11 domain-containing protein | BST98_RS15425 | Not Available | Positive | 201308 - 207898 | 245086.0 |
| ompa family protein | BST98_RS15430 | Not Available | Positive | 207916 - 208437 | 18625.0 |
| hypothetical protein | BST98_RS15435 | Not Available | Positive | 208455 - 211211 | 94788.9 |
| sel1-like repeat protein | BST98_RS15440 | Not Available | Negative | 211396 - 212496 | 41596.1 |
| hypothetical protein | BST98_RS15445 | Not Available | Positive | 212559 - 213152 | 22229.4 |
| sigma-54-dependent transcriptional regulator | BST98_RS15450 | Not Available | Positive | 213372 - 214712 | 51454.2 |
| endonuclease/exonuclease/phosphatase family protein | BST98_RS15455 | Not Available | Negative | 214716 - 215606 | 34915.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

