Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BST98_RS15260 | Not Available | Positive | 117877 - 118176 | 10979.2 |
| hypothetical protein | BST98_RS15265 | Not Available | Negative | 118362 - 118673 | 12300.5 |
| hypothetical protein | BST98_RS15270 | Not Available | Negative | 118799 - 119074 | 10709.0 |
| patatin family protein | BST98_RS15275 | Not Available | Negative | 119603 - 120442 | 31418.8 |
| hypothetical protein | BST98_RS15280 | Not Available | Positive | 120672 - 121175 | 18688.5 |
| lbf_2804 family protein | BST98_RS15285 | Not Available | Negative | 121239 - 122228 | 38136.9 |
| gh92 family glycosyl hydrolase | BST98_RS15290 | Not Available | Negative | 122526 - 124988 | 92237.5 |
| excinuclease abc subunit uvrb | BST98_RS15295 | Not Available | Positive | 125262 - 127214 | 74249.9 |
| voc family protein | BST98_RS15300 | Not Available | Positive | 127303 - 127689 | 13776.4 |
| mate family efflux transporter | BST98_RS15305 | Not Available | Negative | 127759 - 128024 | 9065.37 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

