Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3010 family protein | BST98_RS15160 | Not Available | Negative | 95370 - 95792 | 16092.6 |
| yhfg family protein | BST98_RS15165 | Not Available | Positive | 95940 - 96392 | 17218.7 |
| hypothetical protein | BST98_RS15170 | Not Available | Negative | 96461 - 96811 | 13589.8 |
| m48 family metallopeptidase | BST98_RS15175 | Not Available | Negative | 96882 - 97388 | 19822.4 |
| methyltransferase family protein | BST98_RS15180 | Not Available | Positive | 97495 - 97947 | 16873.0 |
| molybdopterin adenylyltransferase | BST98_RS15185 | Not Available | Positive | 98018 - 98551 | 19356.4 |
| hypothetical protein | BST98_RS15190 | Not Available | Negative | 98674 - 99138 | 18255.6 |
| penicillin-binding protein 1b | BST98_RS15195 | Not Available | Positive | 99377 - 101749 | 87772.3 |
| hcp family type vi secretion system effector | BST98_RS15200 | Not Available | Positive | 102113 - 102631 | 19127.6 |
| type vi secretion system tip protein vgrg | BST98_RS15205 | Not Available | Positive | 102737 - 104758 | 74891.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

