Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome biogenesis factor yjga | BST98_RS01660 | Not Available | Negative | 335074 - 335598 | 20684.2 |
| metalloprotease pmba | BST98_RS01665 | Not Available | Positive | 335710 - 337053 | 48271.1 |
| magnesium transporter | BST98_RS01670 | Not Available | Negative | 337149 - 338507 | 49198.4 |
| hpr family phosphocarrier protein | BST98_RS01675 | Not Available | Negative | 338768 - 339040 | 9644.51 |
| rnase adapter rapz | BST98_RS01680 | Not Available | Negative | 339037 - 339888 | 32292.8 |
| pts iia-like nitrogen regulatory protein ptsn | BST98_RS01685 | Not Available | Negative | 339925 - 340374 | 16466.7 |
| ribosome hibernation promoting factor | BST98_RS01690 | Not Available | Negative | 340377 - 340664 | 10868.0 |
| rna polymerase factor sigma-54 | BST98_RS01695 | Not Available | Negative | 340701 - 342164 | 54876.9 |
| lps export abc transporter atp-binding protein | BST98_RS01700 | Not Available | Negative | 342236 - 342961 | 26918.6 |
| lipopolysaccharide transport periplasmic protein lpta | BST98_RS01705 | Not Available | Negative | 342971 - 343477 | 18768.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

