Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional gnat family n-acetyltransferase/carbon-nitrogen hydrolase family protein | BST98_RS15010 | Not Available | Positive | 65544 - 67055 | 57445.4 |
| m20 aminoacylase family protein | BST98_RS15015 | Not Available | Negative | 67143 - 68294 | 41774.6 |
| dmt family transporter | BST98_RS15020 | Not Available | Negative | 68355 - 69335 | 35267.9 |
| aspartate/glutamate racemase family protein | BST98_RS15025 | Not Available | Negative | 69469 - 70266 | 29034.6 |
| m24 family metallopeptidase | BST98_RS15030 | Not Available | Negative | 70345 - 71511 | 42980.5 |
| transcriptional regulator | BST98_RS15035 | Not Available | Positive | 71842 - 72519 | 25133.2 |
| rida family protein | BST98_RS15040 | Not Available | Positive | 72543 - 72929 | 13851.5 |
| diaminopropionate ammonia-lyase | BST98_RS15045 | Not Available | Positive | 73004 - 74173 | 41774.9 |
| deoxynucleoside kinase | BST98_RS15050 | Not Available | Negative | 74248 - 74910 | 24814.9 |
| lipopolysaccharide biosynthesis protein | BST98_RS15055 | Not Available | Positive | 75224 - 76516 | 49460.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

