Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii c-methyltransferase | BST98_RS14960 | Not Available | Negative | 52684 - 53445 | 27609.4 |
| nitrite transporter nirc | BST98_RS14965 | Not Available | Negative | 53467 - 54285 | 29214.1 |
| nitrite reductase small subunit nird | BST98_RS14970 | Not Available | Negative | 54399 - 54728 | 12397.8 |
| nitrite reductase large subunit nirb | BST98_RS14975 | Not Available | Negative | 54728 - 57292 | 93738.0 |
| bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase | BST98_RS14980 | Not Available | Negative | 57457 - 58404 | 35920.3 |
| ybhb/ybcl family raf kinase inhibitor-like protein | BST98_RS14985 | Not Available | Negative | 58618 - 59172 | 19322.0 |
| lysr family transcriptional regulator | BST98_RS14990 | Not Available | Positive | 59353 - 60240 | 33988.2 |
| hypothetical protein | BST98_RS14995 | Not Available | Positive | 60408 - 60725 | 12777.1 |
| immunoglobulin-like domain-containing protein | BST98_RS15000 | Not Available | Negative | 60826 - 63021 | 79603.6 |
| bcct family transporter | BST98_RS15005 | Not Available | Positive | 63494 - 65410 | 70078.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

