Photobacterium damselae strain Phdp Wu-1

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae strain Phdp Wu-1 is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, particularly within Italian aquaculture settings. This strain is characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures. It possesses flagella, which contribute to its motility, allowing it to navigate its aquatic habitat effectively. P. damselae strain Phdp Wu-1 has a notable genetic structure, consisting of three replicons. This genetic configuration may play a role in its adaptability and survival in a competitive marine ecosystem. The bacterium has been identified as a pathogen, associated with soft-tissue infections in humans (Homo sapiens) and also affecting seabirds such as the razorbill (Alca torda). The presence of P. damselae in aquaculture systems raises concerns about potential health impacts on both human populations and wildlife, particularly in regions where aquaculture practices intersect with natural habitats. The strain's ability to cause infections highlights the importance of monitoring and managing microbial populations in aquaculture to prevent outbreaks that could affect both public health and biodiversity. Accessions for this strain include NZ_CP018297.1, NZ_CP018298.1, and NZ_CP018299.1, which provide genetic sequences that may be valuable for further research into its pathogenic mechanisms and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainstrain Phdp Wu-1

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae strain Phdp Wu-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete

Gene Summary

Adenine Count

929587 bp

Thymine Count

931950 bp

Guanine Count

663051 bp

Cytosine Count

665361 bp

Genome Length

3189949 bp

Protein-coding Genes

2659 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uroporphyrinogen-iii c-methyltransferaseBST98_RS14960Not AvailableNegative52684 - 5344527609.4
nitrite transporter nircBST98_RS14965Not AvailableNegative53467 - 5428529214.1
nitrite reductase small subunit nirdBST98_RS14970Not AvailableNegative54399 - 5472812397.8
nitrite reductase large subunit nirbBST98_RS14975Not AvailableNegative54728 - 5729293738.0
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelataseBST98_RS14980Not AvailableNegative57457 - 5840435920.3
ybhb/ybcl family raf kinase inhibitor-like proteinBST98_RS14985Not AvailableNegative58618 - 5917219322.0
lysr family transcriptional regulatorBST98_RS14990Not AvailablePositive59353 - 6024033988.2
hypothetical proteinBST98_RS14995Not AvailablePositive60408 - 6072512777.1
immunoglobulin-like domain-containing proteinBST98_RS15000Not AvailableNegative60826 - 6302179603.6
bcct family transporterBST98_RS15005Not AvailablePositive63494 - 6541070078.7

Displaying genes 3371 – 3380 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total