Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts fructose transporter subunit eiic | BST98_RS14815 | Not Available | Negative | 19252 - 20310 | 36679.9 |
| Trna-ser | Not Available | Not Available | Positive | 20713 - 20803 | Not Available |
| hypothetical protein | BST98_RS14825 | Not Available | Positive | 21326 - 21706 | 13865.7 |
| type ii secretion system protein | BST98_RS22655 | Not Available | Positive | 21924 - 22508 | 21372.1 |
| sensor domain-containing diguanylate cyclase | BST98_RS14835 | Not Available | Positive | 22663 - 24018 | 52342.8 |
| abc transporter substrate-binding protein | BST98_RS14840 | Not Available | Negative | 24025 - 25056 | 39001.3 |
| nad(p)/fad-dependent oxidoreductase | BST98_RS14845 | Not Available | Positive | 25252 - 26532 | 47490.4 |
| Trna-ser | Not Available | Not Available | Positive | 26671 - 26761 | Not Available |
| bifunctional metallophosphatase/5'-nucleotidase | BST98_RS14855 | Not Available | Positive | 26905 - 28896 | 72405.0 |
| nad(p)h-binding protein | BST98_RS14860 | Not Available | Positive | 29019 - 29684 | 24377.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

