Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BST98_RS22345 | Not Available | Positive | 361404 - 361577 | 6633.49 |
| Hypothetical protein | BST98_RS16110 | Not Available | Positive | 362088 - 362438 | 12950.8 |
| Attl | Not Available | Not Available | Positive | 362547 - 362558 | Not Available |
| hypothetical protein | BST98_RS16115 | Not Available | Positive | 362656 - 362901 | 9025.86 |
| hypothetical protein | BST98_RS16120 | Not Available | Positive | 362973 - 363167 | 7483.15 |
| hypothetical protein | BST98_RS16125 | Not Available | Positive | 363303 - 364079 | 28793.0 |
| Exonuclease:ribonuclease t | BST98_RS16130 | Not Available | Positive | 364072 - 364701 | 23806.6 |
| Integrase | BST98_RS16135 | Not Available | Positive | 364826 - 365863 | 40207.2 |
| Gp139 | BST98_RS16140 | Not Available | Negative | 365902 - 368262 | 87440.4 |
| pyruvate, water dikinase regulatory protein | BST98_RS16145 | Not Available | Positive | 368591 - 369427 | 31853.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

