Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BST98_RS22130 | Not Available | Positive | 289757 - 290053 | 11245.8 |
| hypothetical protein | BST98_RS22135 | Not Available | Positive | 290076 - 290444 | 12193.3 |
| is110 family transposase | BST98_RS22145 | Not Available | Positive | 291062 - 292018 | 35223.9 |
| hypothetical protein | BST98_RS22150 | Not Available | Negative | 292052 - 292756 | 27084.5 |
| endonuclease domain-containing protein | BST98_RS22155 | Not Available | Negative | 292792 - 293838 | 40468.3 |
| hypothetical protein | BST98_RS22160 | Not Available | Negative | 294153 - 294995 | 32242.8 |
| type ii toxin-antitoxin system rele/pare family toxin | BST98_RS22165 | Not Available | Positive | 295535 - 295924 | 14833.0 |
| helix-turn-helix domain-containing protein | BST98_RS22170 | Not Available | Positive | 295917 - 296222 | 11403.0 |
| tyrosine-type recombinase/integrase | BST98_RS22175 | Not Available | Positive | 296459 - 297700 | 46818.9 |
| ig-like domain-containing protein | BST98_RS22180 | Not Available | Positive | 297900 - 300443 | 94524.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

