Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exea family protein | BST98_RS01560 | Not Available | Positive | 310845 - 311693 | 31768.9 |
| tetratricopeptide repeat protein | BST98_RS01565 | Not Available | Positive | 311690 - 312856 | 42432.6 |
| gspe/pule family protein | BST98_RS01570 | Not Available | Positive | 312861 - 314576 | 63735.1 |
| type ii secretion system f family protein | BST98_RS01575 | Not Available | Positive | 314586 - 315803 | 44821.5 |
| hypothetical protein | BST98_RS01580 | Not Available | Positive | 315793 - 316263 | 18295.3 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | BST98_RS01585 | Not Available | Positive | 316292 - 316894 | 21337.3 |
| type ii secretion system protein | BST98_RS01590 | Not Available | Positive | 316918 - 317409 | 16624.0 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | BST98_RS01595 | Not Available | Positive | 317498 - 318001 | 17887.6 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | BST98_RS01600 | Not Available | Positive | 317991 - 318647 | 23912.4 |
| pilw family protein | BST98_RS01605 | Not Available | Positive | 318647 - 319372 | 26449.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

