Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysine-sensitive aspartokinase 3 | BST98_RS01510 | Not Available | Negative | 295841 - 297220 | 49471.6 |
| pyridoxal-phosphate-dependent aminotransferase family protein | BST98_RS01515 | Not Available | Positive | 297771 - 298889 | 40635.1 |
| pgll family o-oligosaccharyltransferase | BST98_RS01520 | Not Available | Negative | 298943 - 300694 | 66609.0 |
| excinuclease abc subunit uvra | BST98_RS01525 | Not Available | Negative | 300847 - 303672 | 104068.0 |
| single-stranded dna-binding protein | BST98_RS01530 | Not Available | Positive | 303939 - 304475 | 19746.0 |
| rnase e specificity factor csrd | BST98_RS01535 | Not Available | Positive | 304626 - 306566 | 73233.7 |
| piln domain-containing protein | BST98_RS01540 | Not Available | Positive | 306782 - 308182 | 52487.4 |
| type 4a pilus biogenesis protein pilo | BST98_RS01545 | Not Available | Positive | 308179 - 308814 | 23921.1 |
| hypothetical protein | BST98_RS01550 | Not Available | Positive | 308807 - 309130 | 11745.3 |
| pilus (msha type) biogenesis protein mshl | BST98_RS01555 | Not Available | Positive | 309144 - 310841 | 60468.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

