Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-processing protein dpra | BST98_RS14480 | Not Available | Negative | 3133651 - 3134745 | 39167.5 |
| lysm peptidoglycan-binding domain-containing protein | BST98_RS14485 | Not Available | Negative | 3134748 - 3135806 | 39937.2 |
| peptide deformylase | BST98_RS14490 | Not Available | Positive | 3136095 - 3136607 | 19077.8 |
| methionyl-trna formyltransferase | BST98_RS14495 | Not Available | Positive | 3136620 - 3137564 | 34319.3 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | BST98_RS14500 | Not Available | Positive | 3137703 - 3138980 | 47466.0 |
| trk system potassium transporter trka | BST98_RS14505 | Not Available | Positive | 3139169 - 3140545 | 50219.6 |
| trkh family potassium uptake protein | BST98_RS14510 | Not Available | Positive | 3140552 - 3141997 | 51861.4 |
| phosphatidylserine decarboxylase family protein | BST98_RS14515 | Not Available | Positive | 3142512 - 3143864 | 50124.1 |
| paqr family membrane homeostasis protein trha | BST98_RS14520 | Not Available | Negative | 3143913 - 3144572 | 24051.7 |
| fadr/gntr family transcriptional regulator | BST98_RS14525 | Not Available | Negative | 3144739 - 3145413 | 25678.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

