Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | Positive | 3125581 - 3127132 | Not Available |
| gamma carbonic anhydrase family protein | BST98_RS14435 | Not Available | Positive | 3127515 - 3128066 | 20187.3 |
| duf1488 domain-containing protein | BST98_RS14440 | Not Available | Negative | 3128056 - 3128322 | 10121.0 |
| shikimate dehydrogenase | BST98_RS14445 | Not Available | Negative | 3128329 - 3129156 | 29557.4 |
| oxygen-dependent coproporphyrinogen oxidase | BST98_RS14450 | Not Available | Negative | 3129165 - 3130076 | 35343.6 |
| l-threonylcarbamoyladenylate synthase | BST98_RS14455 | Not Available | Negative | 3130080 - 3130637 | 20239.0 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | BST98_RS14460 | Not Available | Positive | 3130830 - 3131315 | 16912.5 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | BST98_RS14465 | Not Available | Positive | 3131318 - 3132439 | 40752.9 |
| topoisomerase dna-binding c4 zinc finger domain-containing protein | BST98_RS14470 | Not Available | Negative | 3132507 - 3133064 | 20900.1 |
| duf494 family protein | BST98_RS14475 | Not Available | Negative | 3133175 - 3133648 | 18449.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

