Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2fe-2s iron-sulfur cluster-binding protein | BST98_RS14280 | Not Available | Negative | 3086692 - 3086958 | 9860.1 |
| 4-hydroxy-3-polyprenylbenzoate decarboxylase | BST98_RS14285 | Not Available | Negative | 3087017 - 3088873 | 69404.6 |
| transcription termination factor rho | BST98_RS14290 | Not Available | Negative | 3089071 - 3090330 | 46889.8 |
| thioredoxin trxa | BST98_RS14295 | Not Available | Negative | 3090542 - 3090868 | 11597.0 |
| atp-dependent rna helicase rhlb | BST98_RS14300 | Not Available | Positive | 3090981 - 3092285 | 48857.4 |
| guanosine-5'-triphosphate,3'-diphosphate diphosphatase | BST98_RS14305 | Not Available | Positive | 3092301 - 3093800 | 55610.0 |
| crp/fnr family transcriptional regulator | BST98_RS14310 | Not Available | Positive | 3093847 - 3094416 | 22258.0 |
| gnat family n-acetyltransferase | BST98_RS14315 | Not Available | Positive | 3094498 - 3094968 | 18038.5 |
| oligopeptidase a | BST98_RS14320 | Not Available | Negative | 3095043 - 3097085 | 76684.8 |
| 23s rrna (adenine(2030)-n(6))-methyltransferase rlmj | BST98_RS14325 | Not Available | Positive | 3097283 - 3098122 | 32230.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

