Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | BST98_RS14130 | Not Available | Negative | 3054529 - 3055248 | 26840.0 |
| duf3630 family protein | BST98_RS14135 | Not Available | Negative | 3055388 - 3055702 | 12302.7 |
| atp-dependent dna helicase recq | BST98_RS14140 | Not Available | Negative | 3055995 - 3057836 | 69501.8 |
| gamma-glutamyltransferase | BST98_RS14145 | Not Available | Positive | 3058055 - 3059830 | 64132.1 |
| dna helicase ii | BST98_RS14150 | Not Available | Negative | 3059878 - 3062049 | 82507.0 |
| had-ia family hydrolase | BST98_RS14155 | Not Available | Negative | 3062257 - 3063009 | 28273.8 |
| tyrosine recombinase xerc | BST98_RS14160 | Not Available | Negative | 3063037 - 3063957 | 34720.0 |
| duf484 family protein | BST98_RS14165 | Not Available | Negative | 3063954 - 3064676 | 27238.7 |
| diaminopimelate epimerase | BST98_RS14170 | Not Available | Negative | 3064673 - 3065503 | 30332.3 |
| diaminopimelate decarboxylase | BST98_RS14175 | Not Available | Negative | 3065512 - 3066765 | 46000.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

