Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-independent coproporphyrinogen iii oxidase | BST98_RS14080 | Not Available | Negative | 3042876 - 3044249 | 53285.9 |
| duf2489 domain-containing protein | BST98_RS14085 | Not Available | Negative | 3044355 - 3044834 | 18388.4 |
| der gtpase-activating protein yihi | BST98_RS14090 | Not Available | Negative | 3044838 - 3045383 | 20684.9 |
| class i sam-dependent methyltransferase | BST98_RS14095 | Not Available | Negative | 3045383 - 3046024 | 24186.5 |
| c-type cytochrome | BST98_RS14100 | Not Available | Negative | 3047020 - 3047637 | 21748.0 |
| ribosome biogenesis gtp-binding protein yiha/ysxc | BST98_RS14105 | Not Available | Positive | 3047872 - 3048537 | 24594.8 |
| dna polymerase i | BST98_RS14110 | Not Available | Negative | 3049478 - 3052249 | 102298.0 |
| brna antitoxin family protein | BST98_RS14115 | Not Available | Negative | 3053317 - 3053526 | 8198.76 |
| brnt family toxin | BST98_RS14120 | Not Available | Negative | 3053519 - 3053815 | 11671.6 |
| hypothetical protein | BST98_RS14125 | Not Available | Positive | 3054090 - 3054407 | 12302.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

