Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system secretin gspd | BST98_RS13985 | Not Available | Negative | 3019001 - 3021010 | 73003.0 |
| type ii secretion system protein gspc | BST98_RS13990 | Not Available | Negative | 3021050 - 3021931 | 32267.8 |
| ribosome-associated heat shock protein hsp15 | BST98_RS13995 | Not Available | Positive | 3022225 - 3022632 | 15470.4 |
| hsp33 family molecular chaperone hslo | BST98_RS14000 | Not Available | Positive | 3022756 - 3023634 | 32354.0 |
| phosphoenolpyruvate carboxykinase (atp) | BST98_RS14005 | Not Available | Positive | 3023959 - 3025590 | 59990.9 |
| asma family protein | BST98_RS14010 | Not Available | Positive | 3025765 - 3027720 | 74484.0 |
| bifunctional gnat family n-acetyltransferase/hotdog fold thioesterase | BST98_RS14015 | Not Available | Negative | 3027678 - 3028595 | 35032.2 |
| d-aminoacyl-trna deacylase | BST98_RS14020 | Not Available | Negative | 3028635 - 3029072 | 15664.8 |
| virulence factor brkb family protein | BST98_RS14025 | Not Available | Negative | 3029069 - 3029989 | 33867.9 |
| duf2959 domain-containing protein | BST98_RS14030 | Not Available | Positive | 3030181 - 3030828 | 24303.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

