Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yjag family protein | BST98_RS13635 | Not Available | Negative | 2948607 - 2949194 | 22455.0 |
| d-2-hydroxyacid dehydrogenase | BST98_RS13640 | Not Available | Positive | 2949256 - 2950167 | 34395.9 |
| uroporphyrinogen decarboxylase | BST98_RS13645 | Not Available | Negative | 2950318 - 2951385 | 39569.9 |
| nad(+) diphosphatase | BST98_RS13650 | Not Available | Negative | 2951556 - 2952338 | 29388.6 |
| rsd/algq family anti-sigma factor | BST98_RS13655 | Not Available | Positive | 2952496 - 2952978 | 18491.9 |
| dna-directed rna polymerase subunit beta' | BST98_RS13660 | Not Available | Negative | 2953113 - 2957330 | 155193.0 |
| dna-directed rna polymerase subunit beta | BST98_RS13665 | Not Available | Negative | 2957430 - 2961455 | 149423.0 |
| 50s ribosomal protein l7/l12 | BST98_RS13670 | Not Available | Negative | 2961681 - 2962046 | 12221.7 |
| 50s ribosomal protein l10 | BST98_RS13675 | Not Available | Negative | 2962106 - 2962600 | 17516.1 |
| 50s ribosomal protein l1 | BST98_RS13680 | Not Available | Negative | 2962824 - 2963528 | 24883.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

