Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor p | BST98_RS13430 | Not Available | Negative | 2901390 - 2901956 | 20701.6 |
| ef-p beta-lysylation protein epmb | BST98_RS13435 | Not Available | Positive | 2901990 - 2903012 | 38437.7 |
| 30s ribosomal protein s6--l-glutamate ligase | BST98_RS13440 | Not Available | Positive | 2903451 - 2904353 | 32517.7 |
| hypothetical protein | BST98_RS13445 | Not Available | Positive | 2905838 - 2906179 | 12876.7 |
| t6ss immunity protein tdi1 domain-containing protein | BST98_RS13450 | Not Available | Negative | 2906267 - 2906740 | 17575.0 |
| recombinase family protein | BST98_RS13455 | Not Available | Positive | 2906984 - 2907331 | 13129.7 |
| hnh endonuclease | BST98_RS13460 | Not Available | Negative | 2907553 - 2908338 | 30585.9 |
| chaperonin groel | BST98_RS13470 | Not Available | Negative | 2908745 - 2910388 | 57415.2 |
| co-chaperone groes | BST98_RS13475 | Not Available | Negative | 2910430 - 2910720 | 10310.4 |
| mate family efflux transporter | BST98_RS13480 | Not Available | Positive | 2910939 - 2912297 | 48817.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

