Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| envelope stress response protein pspg | BST98_RS13130 | Not Available | Negative | 2854614 - 2854853 | 8994.53 |
| trna dihydrouridine(20/20a) synthase dusa | BST98_RS13135 | Not Available | Negative | 2855107 - 2856087 | 36866.4 |
| zinc uptake transcriptional repressor zur | BST98_RS13140 | Not Available | Positive | 2856358 - 2856807 | 16864.3 |
| chemotaxis protein chex | BST98_RS13145 | Not Available | Positive | 2856838 - 2857299 | 16770.6 |
| cold-shock protein | BST98_RS13150 | Not Available | Positive | 2857569 - 2857775 | 7435.77 |
| glucose-6-phosphate isomerase | BST98_RS13155 | Not Available | Negative | 2857864 - 2859516 | 61114.5 |
| secondary thiamine-phosphate synthase enzyme yjbq | BST98_RS13160 | Not Available | Positive | 2859750 - 2860169 | 15764.8 |
| bama/tama family outer membrane protein | BST98_RS13165 | Not Available | Negative | 2860267 - 2861547 | 47763.3 |
| alanine racemase | BST98_RS13170 | Not Available | Negative | 2861563 - 2862642 | 38719.6 |
| replicative dna helicase | BST98_RS13175 | Not Available | Negative | 2862681 - 2864078 | 51633.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

