Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | BST98_RS13080 | Not Available | Positive | 2844047 - 2846014 | 72186.9 |
| lysm-like peptidoglycan-binding domain-containing protein | BST98_RS13085 | Not Available | Negative | 2846105 - 2846947 | 30529.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | BST98_RS13090 | Not Available | Positive | 2847070 - 2847690 | 22026.2 |
| duf2780 domain-containing protein | BST98_RS13095 | Not Available | Positive | 2847860 - 2848342 | 16621.9 |
| duf4870 family protein | BST98_RS13100 | Not Available | Negative | 2848502 - 2848831 | 12252.3 |
| phosphoadenylyl-sulfate reductase | BST98_RS13105 | Not Available | Negative | 2848968 - 2849732 | 29031.7 |
| assimilatory sulfite reductase (nadph) hemoprotein subunit | BST98_RS13110 | Not Available | Negative | 2849725 - 2851416 | 63125.5 |
| assimilatory sulfite reductase (nadph) flavoprotein subunit | BST98_RS13115 | Not Available | Negative | 2851416 - 2853242 | 67499.5 |
| hypothetical protein | BST98_RS13120 | Not Available | Negative | 2853423 - 2853653 | 8638.05 |
| tigr04219 family outer membrane beta-barrel protein | BST98_RS13125 | Not Available | Negative | 2853861 - 2854481 | 22569.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

