Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase | BST98_RS12880 | Not Available | Negative | 2796053 - 2796991 | 32293.1 |
| transcriptional regulator argr | BST98_RS12885 | Not Available | Positive | 2797364 - 2797834 | 17100.7 |
| taxi family trap transporter solute-binding subunit | BST98_RS12890 | Not Available | Positive | 2798016 - 2798987 | 34830.4 |
| trap transporter permease | BST98_RS12895 | Not Available | Positive | 2799097 - 2801667 | 93216.6 |
| flavin prenyltransferase ubix | BST98_RS12900 | Not Available | Negative | 2801761 - 2802381 | 22586.5 |
| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligase | BST98_RS12905 | Not Available | Negative | 2802403 - 2803758 | 49104.7 |
| class 1 fructose-bisphosphatase | BST98_RS12910 | Not Available | Positive | 2803996 - 2805006 | 37360.4 |
| inorganic diphosphatase | BST98_RS12915 | Not Available | Positive | 2805153 - 2805683 | 19618.4 |
| rhodanese-like domain-containing protein | BST98_RS12920 | Not Available | Positive | 2805683 - 2806063 | 14267.1 |
| translocation/assembly module tamb domain-containing protein | BST98_RS12925 | Not Available | Negative | 2806154 - 2809906 | 134027.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

