Photobacterium damselae strain Phdp Wu-1

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae strain Phdp Wu-1 is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, particularly within Italian aquaculture settings. This strain is characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures. It possesses flagella, which contribute to its motility, allowing it to navigate its aquatic habitat effectively. P. damselae strain Phdp Wu-1 has a notable genetic structure, consisting of three replicons. This genetic configuration may play a role in its adaptability and survival in a competitive marine ecosystem. The bacterium has been identified as a pathogen, associated with soft-tissue infections in humans (Homo sapiens) and also affecting seabirds such as the razorbill (Alca torda). The presence of P. damselae in aquaculture systems raises concerns about potential health impacts on both human populations and wildlife, particularly in regions where aquaculture practices intersect with natural habitats. The strain's ability to cause infections highlights the importance of monitoring and managing microbial populations in aquaculture to prevent outbreaks that could affect both public health and biodiversity. Accessions for this strain include NZ_CP018297.1, NZ_CP018298.1, and NZ_CP018299.1, which provide genetic sequences that may be valuable for further research into its pathogenic mechanisms and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainstrain Phdp Wu-1

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae strain Phdp Wu-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete

Gene Summary

Adenine Count

929587 bp

Thymine Count

931950 bp

Guanine Count

663051 bp

Cytosine Count

665361 bp

Genome Length

3189949 bp

Protein-coding Genes

2659 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine/thiamine pyrophosphate abc transporter permeaseBST98_RS12780Not AvailablePositive2774037 - 277569260532.3
thiamine abc transporter atp-binding proteinBST98_RS12785Not AvailablePositive2775685 - 277638925757.4
phoh family proteinBST98_RS12790Not AvailableNegative2776479 - 277785551266.4
rna polymerase-associated protein rapaBST98_RS12795Not AvailablePositive2778190 - 2781108110126.0
bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rluaBST98_RS12800Not AvailablePositive2781319 - 278201426768.1
co-chaperone djlaBST98_RS12805Not AvailableNegative2782089 - 278292831300.7
lps assembly protein lptdBST98_RS12810Not AvailablePositive2783101 - 278544988763.7
peptidylprolyl isomerase suraBST98_RS12815Not AvailablePositive2785501 - 278680548364.7
4-hydroxythreonine-4-phosphate dehydrogenase pdxaBST98_RS12820Not AvailablePositive2786798 - 278778735318.8
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaBST98_RS12825Not AvailablePositive2787784 - 278859630659.1

Displaying genes 2531 – 2540 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total