Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase small subunit | BST98_RS12730 | Not Available | Negative | 2760592 - 2761089 | 18103.8 |
| acetolactate synthase 3 large subunit | BST98_RS12735 | Not Available | Negative | 2761082 - 2762806 | 62989.9 |
| amp-dependent synthetase/ligase | BST98_RS12740 | Not Available | Negative | 2763186 - 2765003 | 68784.5 |
| transcriptional regulator leuo | BST98_RS12745 | Not Available | Negative | 2765399 - 2766355 | 35475.6 |
| 2-isopropylmalate synthase | BST98_RS12750 | Not Available | Positive | 2767201 - 2768742 | 56222.7 |
| 3-isopropylmalate dehydrogenase | BST98_RS12755 | Not Available | Positive | 2768770 - 2769861 | 39645.4 |
| 3-isopropylmalate dehydratase large subunit | BST98_RS12760 | Not Available | Positive | 2769895 - 2771319 | 50656.8 |
| 3-isopropylmalate dehydratase small subunit | BST98_RS12765 | Not Available | Positive | 2771319 - 2771921 | 22637.6 |
| duf547 domain-containing protein | BST98_RS12770 | Not Available | Positive | 2771983 - 2772783 | 30881.6 |
| thiamine abc transporter substrate binding subunit | BST98_RS12775 | Not Available | Positive | 2773056 - 2774024 | 36173.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

