Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate carbamoyltransferase | BST98_RS12530 | Not Available | Positive | 2715876 - 2716805 | 34547.1 |
| aspartate carbamoyltransferase regulatory subunit | BST98_RS12535 | Not Available | Positive | 2716825 - 2717289 | 17205.0 |
| arginine repressor | BST98_RS12540 | Not Available | Positive | 2717656 - 2718147 | 18093.8 |
| rida family protein | BST98_RS12545 | Not Available | Positive | 2718278 - 2718664 | 13748.4 |
| isopentenyl-diphosphate delta-isomerase | BST98_RS12550 | Not Available | Negative | 2718738 - 2719268 | 20423.1 |
| 1-acylglycerol-3-phosphate o-acyltransferase | BST98_RS12555 | Not Available | Negative | 2719367 - 2720089 | 26676.8 |
| dna topoisomerase iv subunit a | BST98_RS12560 | Not Available | Negative | 2720239 - 2722503 | 84564.0 |
| dna topoisomerase iv subunit b | BST98_RS12565 | Not Available | Negative | 2722572 - 2724455 | 69654.5 |
| esterase yqia | BST98_RS12570 | Not Available | Negative | 2724644 - 2725222 | 22174.8 |
| 3',5'-cyclic-amp phosphodiesterase | BST98_RS12575 | Not Available | Negative | 2725222 - 2726049 | 30668.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

