Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit chi | BST98_RS12475 | Not Available | Positive | 2700373 - 2700825 | 17166.3 |
| valine--trna ligase | BST98_RS12480 | Not Available | Positive | 2700854 - 2703715 | 108073.0 |
| duf2061 domain-containing protein | BST98_RS12485 | Not Available | Positive | 2703917 - 2704318 | 14914.4 |
| conjugal transfer protein traf | BST98_RS12490 | Not Available | Negative | 2704536 - 2705735 | 43378.5 |
| beta-mannosidase | BST98_RS12495 | Not Available | Negative | 2705948 - 2708374 | 93493.8 |
| ribonuclease e inhibitor rrab | BST98_RS12500 | Not Available | Negative | 2708676 - 2709077 | 15110.0 |
| yfcc family protein | BST98_RS12505 | Not Available | Positive | 2709799 - 2711256 | 52044.9 |
| arginine deiminase | BST98_RS12515 | Not Available | Positive | 2712028 - 2713248 | 45162.0 |
| carbamate kinase | BST98_RS12520 | Not Available | Positive | 2713323 - 2714234 | 32555.3 |
| ornithine carbamoyltransferase | BST98_RS12525 | Not Available | Positive | 2714359 - 2715369 | 37600.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

