Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BST98_RS12420 | Not Available | Positive | 2688500 - 2688883 | 14363.0 |
| Trna-asp | Not Available | Not Available | Positive | 2689498 - 2689574 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2689617 - 2689732 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2689893 - 2692785 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2693082 - 2694633 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 2695440 - 2695525 | Not Available |
| rdd family protein | BST98_RS12455 | Not Available | Positive | 2695834 - 2696325 | 17835.1 |
| lps export abc transporter permease lptg | BST98_RS12460 | Not Available | Negative | 2696395 - 2697465 | 39600.9 |
| lps export abc transporter permease lptf | BST98_RS12465 | Not Available | Negative | 2697465 - 2698565 | 40706.5 |
| leucyl aminopeptidase | BST98_RS12470 | Not Available | Positive | 2698760 - 2700268 | 54454.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

