Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tric cation channel family protein | BST98_RS12320 | Not Available | Positive | 2659124 - 2659738 | 21720.4 |
| deda family protein | BST98_RS12325 | Not Available | Negative | 2659822 - 2660427 | 22371.3 |
| tyrosine--trna ligase | BST98_RS12330 | Not Available | Negative | 2660528 - 2661715 | 44348.7 |
| peptidoglycan dd-metalloendopeptidase family protein | BST98_RS12335 | Not Available | Positive | 2661843 - 2663144 | 48600.1 |
| iron-sulfur cluster insertion protein erpa | BST98_RS12340 | Not Available | Negative | 2663252 - 2663593 | 12022.1 |
| h(+)/cl(-) exchange transporter clca | BST98_RS12345 | Not Available | Negative | 2663655 - 2665055 | 50106.6 |
| glutamate-1-semialdehyde 2,1-aminomutase | BST98_RS12350 | Not Available | Positive | 2665416 - 2666708 | 45867.1 |
| ai-2e family transporter | BST98_RS12355 | Not Available | Positive | 2667083 - 2668171 | 40114.1 |
| 16s rrna (guanine(1207)-n(2))-methyltransferase rsmc | BST98_RS12360 | Not Available | Positive | 2668371 - 2669390 | 37573.8 |
| response regulator | BST98_RS12365 | Not Available | Positive | 2669704 - 2673096 | 127206.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

