Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aerobic respiration two-component sensor histidine kinase arcb | BST98_RS12270 | Not Available | Negative | 2638186 - 2640552 | 89227.2 |
| diguanylate cyclase domain-containing protein | BST98_RS12275 | Not Available | Negative | 2640693 - 2642504 | 68692.9 |
| tigr01212 family radical sam protein | BST98_RS12280 | Not Available | Negative | 2642696 - 2643625 | 34624.6 |
| glutamate synthase large subunit | BST98_RS12285 | Not Available | Positive | 2644269 - 2648816 | 167953.0 |
| glutamate synthase subunit beta | BST98_RS12290 | Not Available | Positive | 2648809 - 2650275 | 53173.4 |
| glutamate synthase large subunit | BST98_RS12295 | Not Available | Positive | 2650499 - 2654959 | 163397.0 |
| fad-dependent oxidoreductase | BST98_RS12300 | Not Available | Positive | 2654971 - 2656389 | 52109.3 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | BST98_RS12305 | Not Available | Positive | 2656516 - 2657214 | 24765.8 |
| cobalamin biosynthesis family protein | BST98_RS12310 | Not Available | Positive | 2657214 - 2658173 | 35646.1 |
| vitamin b12 abc transporter substrate-binding protein btuf | BST98_RS12315 | Not Available | Positive | 2658174 - 2659007 | 31178.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

