Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil-dna glycosylase | BST98_RS12220 | Not Available | Negative | 2626363 - 2627022 | 24716.2 |
| deoxyribonuclease iv | BST98_RS12225 | Not Available | Negative | 2627077 - 2627919 | 31251.2 |
| autonomous glycyl radical cofactor grca | BST98_RS12230 | Not Available | Positive | 2628285 - 2628662 | 13806.4 |
| threonine synthase | BST98_RS12235 | Not Available | Negative | 2628831 - 2630129 | 47055.3 |
| homoserine kinase | BST98_RS12240 | Not Available | Negative | 2630130 - 2631086 | 34509.4 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | BST98_RS12245 | Not Available | Negative | 2631088 - 2633547 | 88470.2 |
| bifunctional isocitrate dehydrogenase kinase/phosphatase | BST98_RS12250 | Not Available | Positive | 2633917 - 2635641 | 67014.3 |
| hypothetical protein | BST98_RS12255 | Not Available | Positive | 2635752 - 2636219 | 17263.2 |
| putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase | BST98_RS12260 | Not Available | Negative | 2636227 - 2636724 | 18085.9 |
| two-component system response regulator arca | BST98_RS12265 | Not Available | Positive | 2637388 - 2638107 | 27412.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

