Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional protein-disulfide isomerase/oxidoreductase dsbc | BST98_RS12170 | Not Available | Negative | 2615823 - 2616554 | 26387.8 |
| site-specific tyrosine recombinase xerd | BST98_RS12175 | Not Available | Negative | 2616729 - 2617625 | 34476.8 |
| flavodoxin fldb | BST98_RS12180 | Not Available | Positive | 2617799 - 2618323 | 19690.0 |
| branched-chain amino acid transport system ii carrier protein | BST98_RS12185 | Not Available | Negative | 2618398 - 2619711 | 46217.7 |
| trna1(val) (adenine(37)-n6)-methyltransferase | BST98_RS12190 | Not Available | Positive | 2620088 - 2620801 | 25666.7 |
| atp-dependent rna helicase srmb | BST98_RS12195 | Not Available | Positive | 2620930 - 2622234 | 48982.9 |
| peroxide stress protein yaaa | BST98_RS12200 | Not Available | Negative | 2622335 - 2623108 | 29132.2 |
| alanine/glycine:cation symporter family protein | BST98_RS12205 | Not Available | Negative | 2623280 - 2624707 | 51262.2 |
| duf3545 family protein | BST98_RS12210 | Not Available | Positive | 2625476 - 2625658 | 7512.76 |
| hemerythrin domain-containing protein | BST98_RS12215 | Not Available | Negative | 2625723 - 2626253 | 21231.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

