Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite exporter taue/safe family protein | BST98_RS12120 | Not Available | Negative | 2603351 - 2604157 | 27530.9 |
| phosphoenolpyruvate--protein phosphotransferase | BST98_RS12125 | Not Available | Negative | 2604177 - 2606435 | 84140.8 |
| rna pyrophosphohydrolase | BST98_RS12130 | Not Available | Negative | 2606476 - 2606997 | 20841.0 |
| dna mismatch repair endonuclease muth | BST98_RS12135 | Not Available | Positive | 2607623 - 2608291 | 24632.8 |
| lysr family transcriptional regulator | BST98_RS12140 | Not Available | Negative | 2608288 - 2609166 | 32206.9 |
| pace efflux transporter | BST98_RS12145 | Not Available | Positive | 2609267 - 2609710 | 17145.5 |
| sigma-54 dependent transcriptional regulator | BST98_RS12150 | Not Available | Negative | 2609776 - 2611092 | 49631.0 |
| lysine--trna ligase | BST98_RS12155 | Not Available | Negative | 2611202 - 2612704 | 57041.2 |
| peptide chain release factor 2 | BST98_RS12160 | Not Available | Negative | 2612737 - 2613835 | 41026.7 |
| single-stranded-dna-specific exonuclease recj | BST98_RS12165 | Not Available | Negative | 2613994 - 2615718 | 62818.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

