Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional riboflavin kinase/fad synthetase | BST98_RS12070 | Not Available | Negative | 2593711 - 2594673 | 35908.6 |
| murein biosynthesis integral membrane protein murj | BST98_RS12075 | Not Available | Negative | 2594755 - 2596314 | 56700.3 |
| 30s ribosomal protein s20 | BST98_RS12080 | Not Available | Positive | 2596525 - 2596785 | 9677.15 |
| arsr/smtb family transcription factor | BST98_RS12085 | Not Available | Negative | 2596876 - 2597178 | 11416.0 |
| transcriptional activator nhar | BST98_RS12090 | Not Available | Negative | 2597276 - 2598163 | 34110.3 |
| hypothetical protein | BST98_RS12095 | Not Available | Negative | 2598264 - 2598509 | 9008.76 |
| na+/h+ antiporter nhaa | BST98_RS12100 | Not Available | Negative | 2598514 - 2599686 | 40688.7 |
| na/pi symporter | BST98_RS12105 | Not Available | Positive | 2600174 - 2601319 | 40176.4 |
| thymidylate synthase | BST98_RS12110 | Not Available | Negative | 2601486 - 2602337 | 32603.8 |
| prolipoprotein diacylglyceryl transferase | BST98_RS12115 | Not Available | Negative | 2602503 - 2603306 | 29898.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

