Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin | BST98_RS12020 | Not Available | Positive | 2579011 - 2580027 | 36953.3 |
| serine-type d-ala-d-ala carboxypeptidase | BST98_RS12025 | Not Available | Positive | 2580137 - 2581531 | 51503.3 |
| magnesium transporter | BST98_RS12030 | Not Available | Negative | 2581635 - 2582486 | 30351.8 |
| carbamoyl-phosphate synthase large subunit | BST98_RS12035 | Not Available | Negative | 2583053 - 2586277 | 117825.0 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | BST98_RS12040 | Not Available | Negative | 2586294 - 2587433 | 40896.4 |
| 4-hydroxy-tetrahydrodipicolinate reductase | BST98_RS12045 | Not Available | Negative | 2587979 - 2588785 | 28470.4 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | BST98_RS12050 | Not Available | Negative | 2588861 - 2589808 | 34880.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | BST98_RS12055 | Not Available | Negative | 2589822 - 2590256 | 15481.4 |
| signal peptidase ii | BST98_RS12060 | Not Available | Negative | 2590365 - 2590865 | 18685.9 |
| isoleucine--trna ligase | BST98_RS12065 | Not Available | Negative | 2590865 - 2593705 | 105846.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

