Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eal domain-containing protein | BST98_RS11915 | Not Available | Positive | 2556909 - 2558933 | 76666.7 |
| ubiquinone anaerobic biosynthesis protein ubiu | BST98_RS11920 | Not Available | Positive | 2559096 - 2560103 | 37326.1 |
| u32 family peptidase | BST98_RS11925 | Not Available | Positive | 2560117 - 2560995 | 32955.2 |
| lipoprotein nlpi | BST98_RS11930 | Not Available | Negative | 2561106 - 2562017 | 34380.6 |
| polyribonucleotide nucleotidyltransferase | BST98_RS11935 | Not Available | Negative | 2562137 - 2564263 | 77269.4 |
| 30s ribosomal protein s15 | BST98_RS11940 | Not Available | Negative | 2564608 - 2564877 | 10240.4 |
| trna pseudouridine(55) synthase trub | BST98_RS11945 | Not Available | Negative | 2565003 - 2565950 | 35005.4 |
| 30s ribosome-binding factor rbfa | BST98_RS11950 | Not Available | Negative | 2565953 - 2566354 | 15348.4 |
| translation initiation factor if-2 | BST98_RS11955 | Not Available | Negative | 2566456 - 2569260 | 102264.0 |
| transcription termination factor nusa | BST98_RS11960 | Not Available | Negative | 2569290 - 2570774 | 54760.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

