Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inosine/xanthosine triphosphatase | BST98_RS11765 | Not Available | Positive | 2512721 - 2513236 | 18635.4 |
| trp operon repressor | BST98_RS11770 | Not Available | Negative | 2513393 - 2513710 | 11862.1 |
| murein transglycosylase | BST98_RS11775 | Not Available | Negative | 2513849 - 2515777 | 72382.4 |
| energy-dependent translational throttle protein etta | BST98_RS11780 | Not Available | Positive | 2516042 - 2517709 | 62291.1 |
| peptidoglycan dd-metalloendopeptidase family protein | BST98_RS11785 | Not Available | Positive | 2517961 - 2518971 | 37459.4 |
| dna repair protein rada | BST98_RS11790 | Not Available | Negative | 2519077 - 2520465 | 49300.9 |
| pilz domain-containing protein | BST98_RS11795 | Not Available | Positive | 2520560 - 2522914 | 90456.6 |
| atpase | BST98_RS11800 | Not Available | Positive | 2523003 - 2523351 | 12787.4 |
| helix-turn-helix domain-containing protein | BST98_RS11805 | Not Available | Positive | 2523354 - 2523656 | 11221.6 |
| phosphoserine phosphatase | BST98_RS11810 | Not Available | Negative | 2523819 - 2524820 | 36566.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

