Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotide exchange factor grpe | BST98_RS11660 | Not Available | Negative | 2488987 - 2489607 | 22934.1 |
| nad(+) kinase | BST98_RS11670 | Not Available | Positive | 2489827 - 2490708 | 32210.6 |
| dna repair protein recn | BST98_RS11675 | Not Available | Positive | 2490901 - 2492568 | 62215.3 |
| outer membrane protein assembly factor bame | BST98_RS11680 | Not Available | Positive | 2492824 - 2493180 | 13467.2 |
| rnfh family protein | BST98_RS11685 | Not Available | Negative | 2493286 - 2493582 | 11345.7 |
| srpbcc family protein | BST98_RS11690 | Not Available | Negative | 2493572 - 2494006 | 15870.2 |
| ssra-binding protein smpb | BST98_RS11695 | Not Available | Positive | 2494200 - 2494682 | 18048.9 |
| Tmrna,resume consensus sequence (at 85): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 2494805 - 2495174 | Not Available |
| is3 family transposase | BST98_RS11705 | Not Available | Positive | 2495496 - 2496673 | 45600.9 |
| hypothetical protein | BST98_RS11710 | Not Available | Negative | 2496862 - 2498274 | 53529.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

