Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 2466521 - 2466596 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2466694 - 2468245 | Not Available |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | BST98_RS11570 | Not Available | Negative | 2468598 - 2469059 | 16726.2 |
| hypothetical protein | BST98_RS11575 | Not Available | Negative | 2469049 - 2470335 | 46124.6 |
| pilw family protein | BST98_RS11580 | Not Available | Negative | 2470335 - 2470961 | 22258.6 |
| tfp pilus assembly protein fimt/fimu | BST98_RS11585 | Not Available | Negative | 2470945 - 2471532 | 21821.5 |
| type iv pilin protein | BST98_RS11590 | Not Available | Positive | 2471666 - 2472082 | 14897.0 |
| hypothetical protein | BST98_RS11595 | Not Available | Negative | 2472447 - 2473340 | 34609.9 |
| duf4832 domain-containing protein | BST98_RS11600 | Not Available | Positive | 2473574 - 2475082 | 58233.4 |
| hypothetical protein | BST98_RS11605 | Not Available | Negative | 2475115 - 2475534 | 16215.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

