Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 5-hydroxyuridine modification protein yegq | BST98_RS11455 | Not Available | Positive | 2445770 - 2447146 | 51910.8 |
| yfhl family 4fe-4s dicluster ferredoxin | BST98_RS11460 | Not Available | Positive | 2447152 - 2447406 | 9411.24 |
| penicillin-insensitive murein endopeptidase | BST98_RS11465 | Not Available | Negative | 2447500 - 2448303 | 29737.7 |
| formate dehydrogenase accessory sulfurtransferase fdhd | BST98_RS11470 | Not Available | Negative | 2448672 - 2449520 | 31225.8 |
| formate dehydrogenase-n subunit alpha | BST98_RS11480 | Not Available | Positive | 2449625 - 2452639 | 111561.0 |
| formate dehydrogenase subunit beta | BST98_RS11485 | Not Available | Positive | 2452643 - 2453533 | 32706.0 |
| formate dehydrogenase subunit gamma | BST98_RS11490 | Not Available | Positive | 2453530 - 2454162 | 23910.7 |
| formate dehydrogenase accessory protein fdhe | BST98_RS11495 | Not Available | Positive | 2454325 - 2455215 | 33472.4 |
| l-seryl-trna(sec) selenium transferase | BST98_RS11500 | Not Available | Positive | 2455292 - 2456743 | 53185.2 |
| selenocysteine-specific translation elongation factor | BST98_RS11505 | Not Available | Positive | 2456740 - 2458659 | 72229.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

