Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | BST98_RS11405 | Not Available | Negative | 2433414 - 2437211 | 142868.0 |
| exonuclease sbccd subunit d c-terminal domain-containing protein | BST98_RS11410 | Not Available | Negative | 2437217 - 2438458 | 46583.7 |
| hypothetical protein | BST98_RS11415 | Not Available | Positive | 2438946 - 2439338 | 14163.8 |
| recombination-associated protein rdgc | BST98_RS11420 | Not Available | Positive | 2439613 - 2440524 | 34442.5 |
| hypothetical protein | BST98_RS11425 | Not Available | Negative | 2440576 - 2440893 | 12395.7 |
| sdr family nad(p)-dependent oxidoreductase | BST98_RS11430 | Not Available | Negative | 2441012 - 2441809 | 28196.7 |
| permease | BST98_RS11435 | Not Available | Negative | 2441854 - 2443227 | 50460.2 |
| methylated-dna--[protein]-cysteine s-methyltransferase | BST98_RS11440 | Not Available | Positive | 2443460 - 2443936 | 17397.0 |
| dna-3-methyladenine glycosylase i | BST98_RS11445 | Not Available | Negative | 2443933 - 2444523 | 22609.1 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | BST98_RS11450 | Not Available | Positive | 2444954 - 2445598 | 22659.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

