Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | BST98_RS11305 | Not Available | Negative | 2408780 - 2409832 | 38934.2 |
| trypsin-like serine protease | BST98_RS11310 | Not Available | Negative | 2409927 - 2411036 | 40264.8 |
| cbs domain-containing protein | BST98_RS11315 | Not Available | Positive | 2411219 - 2411695 | 17267.7 |
| isocitrate lyase | BST98_RS11320 | Not Available | Negative | 2411780 - 2413087 | 47940.4 |
| malate synthase a | BST98_RS11325 | Not Available | Negative | 2413168 - 2414766 | 60364.0 |
| hydrogen peroxide-inducible genes activator | BST98_RS11330 | Not Available | Negative | 2415430 - 2416326 | 33094.2 |
| peroxiredoxin c | BST98_RS11335 | Not Available | Positive | 2416457 - 2417065 | 22309.4 |
| copper homeostasis protein cutc | BST98_RS11340 | Not Available | Positive | 2417322 - 2418059 | 26339.0 |
| yada c-terminal domain-containing protein | BST98_RS11345 | Not Available | Positive | 2418350 - 2419087 | 26073.5 |
| hypothetical protein | BST98_RS11350 | Not Available | Positive | 2419317 - 2420084 | 27960.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

