Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iscs subfamily cysteine desulfurase | BST98_RS11255 | Not Available | Negative | 2398470 - 2399684 | 44906.6 |
| fe-s cluster assembly transcriptional regulator iscr | BST98_RS11260 | Not Available | Negative | 2399716 - 2400237 | 18533.0 |
| trna (cytosine(32)/uridine(32)-2'-o)-methyltransferase trmj | BST98_RS11265 | Not Available | Negative | 2400348 - 2401079 | 26869.7 |
| inositol-1-monophosphatase | BST98_RS11270 | Not Available | Positive | 2401349 - 2402152 | 28900.6 |
| hypothetical protein | BST98_RS22600 | Not Available | Positive | 2402234 - 2402359 | 4994.97 |
| duf6602 domain-containing protein | BST98_RS11275 | Not Available | Positive | 2402602 - 2403438 | 32117.4 |
| protein translocase subunit secf | BST98_RS11285 | Not Available | Negative | 2404119 - 2405066 | 34168.1 |
| protein translocase subunit secd | BST98_RS11290 | Not Available | Negative | 2405080 - 2406933 | 67193.8 |
| preprotein translocase subunit yajc | BST98_RS11295 | Not Available | Negative | 2406977 - 2407315 | 12170.1 |
| trna guanosine(34) transglycosylase tgt | BST98_RS11300 | Not Available | Negative | 2407339 - 2408472 | 42933.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

