Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase | BST98_RS11150 | Not Available | Negative | 2379637 - 2380509 | 32934.9 |
| glycine zipper domain-containing protein | BST98_RS11155 | Not Available | Positive | 2380697 - 2381197 | 17082.5 |
| duf5384 family protein | BST98_RS11160 | Not Available | Positive | 2381194 - 2381733 | 20740.4 |
| ribosome biogenesis gtpase der | BST98_RS11165 | Not Available | Negative | 2381792 - 2383291 | 56033.2 |
| outer membrane protein assembly factor bamb | BST98_RS11170 | Not Available | Negative | 2383505 - 2384665 | 41123.6 |
| yfgm family protein | BST98_RS11175 | Not Available | Negative | 2384677 - 2385291 | 22332.3 |
| histidine--trna ligase | BST98_RS11180 | Not Available | Negative | 2385305 - 2386573 | 47379.0 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | BST98_RS11185 | Not Available | Negative | 2386670 - 2387791 | 41035.4 |
| cytoskeleton protein rodz | BST98_RS11190 | Not Available | Negative | 2387805 - 2388788 | 35693.6 |
| type iv pilus biogenesis/stability protein pilw | BST98_RS11195 | Not Available | Negative | 2388781 - 2389536 | 28753.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

