Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6,7-dimethyl-8-ribityllumazine synthase | BST98_RS11050 | Not Available | Negative | 2354661 - 2355131 | 16333.6 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | BST98_RS11060 | Not Available | Negative | 2355341 - 2356444 | 39703.6 |
| riboflavin synthase | BST98_RS11065 | Not Available | Negative | 2356472 - 2357128 | 23260.2 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | BST98_RS11070 | Not Available | Negative | 2357149 - 2358285 | 40973.5 |
| transcriptional regulator nrdr | BST98_RS11075 | Not Available | Negative | 2358305 - 2358754 | 17070.4 |
| serine hydroxymethyltransferase | BST98_RS11080 | Not Available | Negative | 2358951 - 2360201 | 45151.7 |
| nitrogen regulatory protein p-ii | BST98_RS11085 | Not Available | Negative | 2360593 - 2360931 | 12520.2 |
| hypothetical protein | BST98_RS11090 | Not Available | Negative | 2360998 - 2361375 | 13758.8 |
| phosphoribosylformylglycinamidine synthase | BST98_RS11095 | Not Available | Negative | 2361748 - 2365653 | 142007.0 |
| membrane-bound lytic murein transglycosylase mltf | BST98_RS11100 | Not Available | Positive | 2366095 - 2367537 | 54408.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

